Pumpkin Cream Cheese Muffins

Section: Rise and Shine with Delicious Breakfast Recipes

Pumpkin cream cheese muffins blend luscious pumpkin puree with aromatic spices and a creamy swirl baked right on top, creating a perfectly moist treat. The batter is quick to mix, with all-purpose flour, pantry sugars, and oil keeping it soft and tender. The signature cream cheese topping adds tang and richness, melting into golden tops as they rise. Serve warm for breakfast, brunch, or an autumn snack—these muffins disappear fast! Simplify your prep by measuring ingredients ahead of time and letting your cheese and eggs reach room temperature. Bake, swirl, and savor every bite!

A woman wearing a chef's hat and apron.
Recipe Author Maria
Updated as of Sat, 05 Jul 2025 21:46:39 GMT
A muffin with cream cheese and pumpkin on top. Bookmark
A muffin with cream cheese and pumpkin on top. | foodbymary.com

These pumpkin cream cheese muffins are the ultimate fall treat for anyone who craves the cozy flavors of pumpkin and the creamy tang of cheesecake all in one bite. The baked-in swirl of sweet cream cheese brings out the best in these moist muffins, making them perfect for a quick breakfast, snack, or holiday brunch. I never get through October without making at least a few dozen because my whole family insists on it every year.

Ingredients

  • All-purpose flour: ensures a light and tender texture look for unbleached if possible and measure by spooning into the cup not scooping from the bag
  • Pumpkin puree: gives gorgeous color flavor and moisture use pure pumpkin not pie filling for best results
  • Granulated sugar and light brown sugar: create a balanced sweetness and rich crumb the combo gives a nice tender bite
  • Vegetable oil: delivers extra moisture and keeps the muffins soft and fluffy choose neutral-flavored oil like canola or sunflower
  • Eggs and additional egg yolk: add richness and help bind the batter use room temperature for smoothest mixing
  • Full-fat cream cheese: creates the classic cheesecake swirl cut into cubes and bring to room temperature for easy blending
  • Vanilla extract: deepens the flavor just a splash makes the muffins smell like bakery ones
  • Pumpkin spice blend: brings the signature warmth you can make your own or use cinnamon and nutmeg in a pinch
  • Baking soda and salt: balance sweetness and help with lift
  • For extra flair: try pumpkin seeds or chopped pecans on top both look pretty and bring a bit of crunch

Step-by-Step Instructions

Prepare Dry Ingredients:
Whisk together flour pumpkin spice baking soda and salt in a medium bowl making sure no lumps remain This step is essential for evenly dispersing the spices and leaveners
Mix Wet Ingredients:
Combine pumpkin granulated sugar and brown sugar in a large bowl Whisk until well blended and smooth Beat in the eggs oil and vanilla until fully combined at this stage everything should look glossy
Combine Wet and Dry:
Gradually add the dry mixture to the wet mixture using a spatula or wooden spoon Stir gently just until the flour disappears taking care not to overwork the batter Fill muffin liners about three quarters full for best rise
Make Cream Cheese Swirl:
In a separate bowl beat cream cheese until creamy and smooth Add in sugar egg yolk and vanilla Beat again until completely blended and thick
Swirl Cream Cheese:
Place about one tablespoon of cream cheese mixture onto each unbaked muffin Using a toothpick gently swirl the cream cheese into the top surface Feel free to be artistic or just leave it as a dollop for a rustic look
Bake:
Bake muffins in a preheated oven at three fifty degrees Fahrenheit for eighteen to twenty minutes Muffins should spring back when gently pressed and a toothpick in the pumpkin section comes out mostly clean Let them cool in the tin for a few minutes before eating
A plate of pumpkin cream cheese muffins. Bookmark
A plate of pumpkin cream cheese muffins. | foodbymary.com

The cream cheese swirl is my favorite part because it reminds me of baking cheesecake with my mom every Thanksgiving We would always save a little batter for muffins and now I get to pass on that tradition to my kids with this recipe

Storage Tips

Store cooled muffins in an airtight container at room temperature for up to two days For longer freshness keep them in the fridge up to five days Refrigeration helps keep the cream cheese swirl food safe These muffins also freeze very well Place in a freezer bag and thaw overnight

Ingredient Substitutions

If you do not have vegetable oil melted and cooled butter works too but will add a richer flavor For a lighter muffin substitute half of the flour for whole wheat or white whole wheat You can use all granulated sugar or all brown sugar based on what you have on hand Mascarpone can replace cream cheese for a slightly less tangy swirl

Serving Suggestions

Serve these muffins warm with a little butter for breakfast They also pair perfectly with coffee or spiced tea Try cutting them in half and adding a few fresh berries or a dusting of powdered sugar for brunch These make a fantastic snack for kids lunches or a cozy dessert after a weeknight dinner

A plate of pumpkin cream cheese muffins. Bookmark
A plate of pumpkin cream cheese muffins. | foodbymary.com

Cultural Context

Pumpkin cream cheese muffins are a twist on both American pumpkin bread and cheesecake Classic pumpkin muffins have been an autumn favorite in North America for generations Swirling in cream cheese likely started with coffee shop bakers looking for a little extra wow These muffins are now beloved everywhere from family holidays to school bake sales

Frequently Asked Questions

→ How do I achieve a perfect cream cheese swirl?

For a defined swirl, use a toothpick to gently drag the cream cheese mixture through the muffin batter before baking.

→ Can I use homemade pumpkin puree?

Yes, just ensure your puree is as thick as canned and not too watery for best muffin texture and rise.

→ What can I substitute for vegetable oil?

Melted butter can replace oil for a richer taste, but oil yields a slightly moister crumb in these muffins.

→ Is it possible to freeze these muffins?

Absolutely. Cool completely, then wrap tightly and freeze for up to 2 months. Thaw at room temperature before serving.

→ Should the cream cheese be at room temperature?

Yes, softened cream cheese blends smoothly for a creamy, lump-free swirl in every muffin.

→ Can I add nuts or seeds?

Chopped pecans, walnuts, or pepitas make great additions—stir into the batter or sprinkle on top before baking.

Pumpkin Cream Cheese Muffins

Soft pumpkin muffins feature sweet cream cheese swirls for a moist, crowd-pleasing fall favorite ready in 30 minutes.

Prep Time
12 minutes
Cooking Time
20 minutes
Overall Time
32 minutes
Recipe Author: Maria

Dish Category: Breakfast

Recipe Difficulty: Beginner-Friendly

Cuisine: American

Serves: 12 Serving Size (12 standard muffins)

Dietary Options: Vegetarian

What You’ll Need to Cook

→ Pumpkin Muffin Batter

Ingredient 01 250 g all-purpose flour
Ingredient 02 2 teaspoons pumpkin spice blend (see note for blend substitution)
Ingredient 03 1 teaspoon baking soda
Ingredient 04 0.5 teaspoon fine salt
Ingredient 05 425 g pumpkin puree
Ingredient 06 130 g granulated sugar
Ingredient 07 100 g light brown sugar
Ingredient 08 120 ml vegetable oil
Ingredient 09 2 large eggs, room temperature
Ingredient 10 1 teaspoon vanilla extract

→ Cream Cheese Swirl

Ingredient 11 170 g full-fat cream cheese, room temperature
Ingredient 12 50 g granulated sugar
Ingredient 13 1 egg yolk, room temperature
Ingredient 14 0.5 teaspoon vanilla extract

Steps to Prepare

Step 01

Preheat oven to 180°C. Line a standard 12-cup muffin tin with paper liners. In a medium bowl, whisk flour, pumpkin spice, baking soda, and salt until evenly combined.

Step 02

In a large bowl, whisk pumpkin puree, granulated sugar, and brown sugar until well blended. Add eggs, vegetable oil, and vanilla extract. Whisk until the mixture is smooth and fully incorporated.

Step 03

Slowly add the dry ingredients to the wet ingredients, gently folding until just combined and no streaks of flour remain. Avoid overmixing to prevent dense muffins.

Step 04

Spoon the pumpkin batter into the prepared muffin cups, filling each about 3/4 full.

Step 05

In another bowl, beat the cream cheese until smooth. Add granulated sugar, egg yolk, and vanilla. Mix until creamy and homogeneous.

Step 06

Top each muffin batter with approximately 1 tablespoon of the cream cheese mixture. Use a toothpick to gently swirl the cream cheese into the muffin surface, or simply dollop in center as desired.

Step 07

Bake in the centre of the oven for 18–20 minutes or until a toothpick inserted into the muffin batter (not the cream cheese) comes out with only a few moist crumbs clinging.

Step 08

Allow muffins to cool in tin for 5 minutes, then transfer to a wire rack to cool completely before serving.

Extra Cooking Tips

  1. Ensure cream cheese and eggs are at room temperature for smoother blending and optimal swirling.
  2. Avoid overfilling muffin liners to prevent overflow, as the cream cheese filling adds extra volume.
  3. For a homemade pumpkin spice blend: combine 4 tsp cinnamon, 2 tsp ginger, 1 tsp ground cloves, 0.5 tsp nutmeg, and 0.5 tsp allspice.

Must-Have Tools

  • 12-cup muffin tin
  • Paper muffin liners
  • Medium mixing bowls
  • Whisk
  • Spatula
  • Electric hand mixer or stand mixer
  • Toothpick
  • Wire cooling rack

Allergen Information

Always check ingredient labels for allergens and seek expert advice if uncertain.
  • Contains eggs, wheat (gluten), milk (dairy).

Nutrition Info (Per Serving)

These details are for guidance and aren’t a replacement for professional advice.
  • Calories Count: 265
  • Fats: 11 grams
  • Carbs: 35 grams
  • Proteins: 4 grams